PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G159000.1
Common NameB456_008G159000, LOC105764273
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 471aa    MW: 53408.3 Da    PI: 8.5217
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G159000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.91.3e-11287330755
                         HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                         + Er+RR++i++++++Lr l+Pk +      K++  +iL+ A+eYI +Lq
  Gorai.008G159000.1 287 ITERNRRKKIKDGLFKLRALVPKiS------KMDITAILTDAMEYIGNLQ 330
                         68*********************66......****************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142157.0E-1811158IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474594.06E-13276342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.919280329IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.81E-10283334No hitNo description
SMARTSM003534.7E-11286335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-13287344IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.3E-9287330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MRGFERAVEW LRSFVYSNAW DFCVVWKLGD DPSRFIEWKD CCCSGGINVK VEQDKLQLQG  60
PPLCRDAQFQ HSIRSKACEA LSHFPFAVSL YAGENRIHGE VAISSQPKWL NHANISTSLS  120
SEETMGTQVL IPVFGGLIEL FASKNIPKDQ NIVELIRTEC NALLKAETTT AESYRKANLH  180
KWYLNTLQEK DLPFSMSLST VNPRIQFIPS IGHPPFSSAS AYISQDEQLK QPIGTYYGTK  240
RLGCSQNVCA QQTEIGLVLD CKVNSVNDKM RTAKQPEKVN YHSKNLITER NRRKKIKDGL  300
FKLRALVPKI SKMDITAILT DAMEYIGNLQ EEEKKLRNEL KETEEGDCGK SNAELKSAKL  360
DWLHRKNMST IEENHIPSGI SEMAKIEVHV EVNQITKREF WIKLCYKHKR SGFAKLMEGM  420
DSLGLGVIDA NITTFNGNVL NIFKVEGFRV QAIERLVDPP NKLDKQRYTV *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012438253.10.0PREDICTED: transcription factor bHLH90-like isoform X1
TrEMBLA0A0D2RG540.0A0A0D2RG54_G
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69852742
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10610.17e-70bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]